Generate random bstr sequences of desired lengths.

Generate random bstr sequences of desired lengths.

bstr_rand_seq(n, length, pattern = "[A-Za-z]", seed)

dstr_rand_seq(n, length, pattern = "[ATGC]", seed)

astr_rand_seq(n, length, pattern = "[ARNDCQEGHILKMFPSTWYVX]", seed)

Arguments

n	single integer, nubmer of sequences
length	integer vector, desired sequence lengths
pattern	character vector specifying character classes
seed	a single integer. specify seeds.

Examples

bstr_rand_seq(3, 20, seed = 1)
#> class: bstr,character 
#> number of sequences: 3 
#> [1]      no name 1      : NTdvKuxigDKJjToZlzTo                     20 
#> [2]      no name 2      : wLhGNUATtRZfZJripFlV                     20 
#> [3]      no name 3      : qhocbpBYmkYsWMDFQaiV                     20 
bstr_rand_seq(3, 5:7, c("[a-c]", "[A-C]", "[1-3]"), seed = 1)
#> class: bstr,character 
#> number of sequences: 3 
#> [1]      no name 1      : abbca                                    5 
#> [2]      no name 2      : CCBBAA                                   6 
#> [3]      no name 3      : 1323233                                  7 

dstr_rand_seq(3, 20, seed = 1)
#> class: dstr,bstr,character 
#> number of sequences: 3 
#> [1]      no name 1      : CCGTATTGGAAAGCTCGTCT                     20 
#> [2]      no name 2      : TAGACCACTCCGCATGTAGC                     20 
#> [3]      no name 3      : TGTGGTACGGCTCAAACGGC                     20 
dstr_rand_seq(3, 5:7, c("[atcg]", "[ATCG]", "[N.]"), seed = 1)
#> class: dstr,bstr,character 
#> number of sequences: 3 
#> [1]      no name 1      : ccgta                                    5 
#> [2]      no name 2      : TTGGAA                                   6 
#> [3]      no name 3      : .N.N.NN                                  7 

astr_rand_seq(3, 20, seed = 1)
#> class: astr,bstr,character 
#> number of sequences: 3 
#> [1]      no name 1      : GIPXFWXQQCFERKTMSYIT                     20 
#> [2]      no name 2      : XFQDGKAKWIMPMEVRTDSK                     20 
#> [3]      no name 3      : VQTNNTAMSRMWLGCDHMQK                     20 
astr_rand_seq(3, 5:7, c("[arnd]", "[ARND]", "[X.]"), seed = 1)
#> class: astr,bstr,character 
#> number of sequences: 3 
#> [1]      no name 1      : ddnra                                    5 
#> [2]      no name 2      : RRNNAA                                   6 
#> [3]      no name 3      : .X.X.XX                                  7